PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093555.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 350aa    MW: 39248.6 Da    PI: 4.8097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.7e-29133193158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgynWrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r++edp+++e++Y+g+H +
  XP_011093555.1 133 LDDGYNWRKYGQKDILGANHPRAYYRCTHRktqGCLATKQVQRADEDPSIFEVIYSGKHSC 193
                     59***************************98999*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28122193IPR003657WRKY domain
PROSITE profilePS5081123.479128192IPR003657WRKY domain
SuperFamilySSF1182902.88E-25132193IPR003657WRKY domain
SMARTSM007744.6E-41133195IPR003657WRKY domain
PfamPF031065.0E-27134193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEKLASLDRK SVISVLTQGK ELANELKKQL HPTATSNEAC DSLLENILSS YENALRLLNC  60
MALLGNGGDP SQIGVSNFLG SAYSIEGSPR SEVSEHSSKD HQPHRVVSKK RKTLPRWSEQ  120
VRVCSETGSE GQLDDGYNWR KYGQKDILGA NHPRAYYRCT HRKTQGCLAT KQVQRADEDP  180
SIFEVIYSGK HSCIQERLKQ KKENLIIQNK EEESQRHSQQ MLMLSTEPTL KVETQELDTE  240
EGSFPYFSFP STPIDSENVE PQLFPESTNF IGTSYTPPFL SPATSESYFS FSPCPVNDFG  300
IVHSLQSSES DFAEIISNPT PATSFPFEDL DFLIDQVDFG SHFLDANDCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-141331921773Probable WRKY transcription factor 4
2lex_A4e-141331921773Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093555.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0D5Y9961e-134A0A0D5Y996_SALMI; WRKY protein
STRINGPOPTR_0014s09190.13e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-51WRKY family protein